I wouldn't replace the stock speakers. They're quite good.
If you're replacing the speakers, you'll have to replace all of them, as the newer speakers probably have different characteristics than the older ones, causing out of phase frequencies, as well as certain resonant frequencies that sound much louder than on the stockers (hey, the whole sound system was designed by engineers, to be stock).
Polk speakers aren't the worst. They're actually known to be a pretty good speaker brand, and very affordable!
However, poly speakers always will give you flobby bass.
What's more,
A lot of those poly cone speakers, are tuned for high power and volume output.
With a car radio that's usually out putting anything between 20 and 40W RMS max, those speakers aren't even functioning at 25% of their capabilities.
Basically running high power speakers at lower wattages, will have lower efficiency, and you'll end up with LOWER volumes, not higher.
In order for you to hear some improvement in sound, you'll first need to overcome the speaker's efficiency difference from the stockers, like, most of those 200W speakers, usually have 3dB SPL lower than the factory speakers (which usually are 50-100W RMS).
Meaning that running them both on the same power, the lower power (stock) speakers, which are driven harder, will sound louder.
To overcome eg: a 3dB difference, you'll have to double the power output you put in the newer speakers.
So, if this was the case that the newer are 3dB lower in SPL, for them to sound the same in volume, you need to drive the speakers with an amp that can put out double the power, or 80W per speaker (at the rated ohms the speakers have).
Since most of the upgraded speakers (poly cones) are rated at around 200W, you can double that to 160W RMS giving you an additional 3dB over the stock speakers; although the modified speakers probably have a much deeper bass output than the stockers.
It'll be a noticeable improvement, but you'll need to drive them with more than 80W per channel amp to notice the difference.
Actually, chances are that the stock speakers won't function at their maximum rated output anyway, because of longevity and warranty reasons, so chances are that even at 80W output per channel, the upgraded speakers will be noticeably louder.
But with the stock amplifier, you won't hear any improvement swapping out the stock with the newer drivers; but lower volumes.
If your new door speakers are 8 ohms, 200W, make sure you get an amp that can drive that.
It'll mean a ~300-400W at 4 ohms output to drive 200W at 8ohms. RMS. Not the cheap chinese crap ratings of 1000W, and when you test them, they barely make 150W.